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#Python cytoscape how to#

He has been a contributing member to Cytoscape since 2006 and has led numerous Cytoscape and Network Biology workshops and mentoring programs over the past 10 years. Alex is the executive director of the National Resource for Network Biology, the vice president of the Cytoscape Consortium, and associate director of bioinformatics at Gladstone Institutes. Installation instructions will be provided in the weeks preceding the tutorial.Īlexander Pico, Gladstone Institutes. Participants are required to bring a laptop with Cytoscape, R, RStudio and Python installed.

Bioinformatics analysis using R or Python.

This tutorial is intended for an audience that has prior experience with at least one of the following:

Generalize network analysis methods to multiple problem domains.

Integrate Cytoscape into your bioinformatics pipelines.

Command programmatic control over Cytoscape.

Identify and discriminate relevant source of interactions, networks and datasets.

#Python cytoscape how to#

Know when and how to use Cytoscape in your research area.By the end of tutorial, you should be able to The bulk of the workshop will be a hands-on demonstration of accessing and controlling Cytoscape from R and Python to perform a network analysis of tumor expression and variant data. We will begin with an overview of network biology themes and concepts, and then we will translate these into Cytoscape terms for practical applications.

In this workshop, we will demonstrate new capabilities to integrate Cytoscape into programmatic workflows and pipelines using R and Python. Slides for the workshop are available for download here!Ĭytoscape is one of the most popular applications for network analysis and visualization.

Discover the new capabilities of Cytoscape using R and Python.